FSSP DATABASE PDF

Abstract: FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. (PDB) (1). The current release. PDF | FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB). The database currently. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB) [1]. The database currently .

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The FSSP database of structurally aligned protein fold families.

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The FSSP database: fold classification based on structure-structure alignment of proteins

GTPase domains of ras p21 oncogene protein and elongation factor Tu: More information on the Dali server 10 is available on the WWW at: In addition to the guide structures, the alignment includes representative sequence homologs Swissprot column; first sequence corresponds to the known structure taken from the HSSP database of sequence-sequence alignments Combining multiple structure-structure alignments with multiple sequence-sequence alignments.

The results of the fssp pairwise structure comparisons are reported in the form of a fold tree generated by hierachical clustering and as a series of structurally representative sets of folds at varying levels of uniqueness. The index can be used for searching by protein name fasp PDB code. For example, Figure 2 shows how the first C2 domain of synaptotagmin I PDB entry 1RSYwhich presented a new calcium-binding fold 7is firmly anchored in a large structural class that contains beta-sandwich proteins with topological similarity to immunoglobulin-like domains and blue copper proteins.

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Retrieved from ” https: Database of homology-derived protein structures and satabase structural databas of sequence alignment. TaylorIosif I.

This paper has highly influenced 11 other papers. You must accept the terms and conditions. From This Paper Figures, tables, and topics from this paper. Determinants of a protein fold. Disambiguation pages with short description All article disambiguation pages All disambiguation pages.

Families of Structurally Similar Proteins database – Wikipedia

Wikinews 0 entries edit. LiBoojala V. The structure comparison program Dali 9 defines the extent of the common structural core by maximizing the agreement of intra molecular CA-CA distances.

A database of protein structure families with gssp folding motifs. If an internal link led you here, you may wish to change the link to point directly to the intended article.

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FSSP database of structurally aligned protein fold families

Firing squad synchronization problem Search for additional papers on this topic. ShindyalovPhilip E. Petera group of Catholic priests and seminarians Forward Scattering Spectrometer Probea class of optical instruments designed to measure size and concentration of particles suspended in the air such as cloud droplets Disambiguation page providing links to topics fssp could be referred to by the same search term. The Protein Data Bank: Please check for further fssl by email.

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By using this site, you agree to the Terms of Use and Privacy Policy. Open in a separate window. Three-dimensional frameworks derived from the simultaneous superposition of multiple structures.

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Overview of protein fold space. See below for automatic parsing of FSSP entries. Academic redistribution of single files or of the entire database is permitted. Not to be used for classified research. The FSSP database contains a fold classification based on exhaustive structural alignments of known structures. Firing squad synchronization problem Protein Data Bank Hierarchical clustering.

Cluster analysis statistical cluster. The database provides a rich source of information for the study of both divergent and tssp aspects of the evolution of protein folds and defines useful test sets and a standard of daatabase for assessing the correctness of sequence-sequence or sequence-structure alignments.